PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g13800.4
Common NameLR48_Vigan02g137300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 193aa    MW: 21193.6 Da    PI: 9.5278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g13800.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-184998355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr+++ +g+++AeIrd + ng   r+++g+f+tae Aa a+++a+ + +g
  Vang06g13800.4 49 FRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 98
                    8*******.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3448112IPR001471AP2/ERF domain
PROSITE profilePS5103222.31348106IPR001471AP2/ERF domain
PfamPF008471.6E-124998IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2949107IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2149107IPR016177DNA-binding domain
CDDcd000181.24E-1749107No hitNo description
PRINTSPR003674.8E-104960IPR001471AP2/ERF domain
PRINTSPR003674.8E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKESSSSDSN SSGCLVSSES QVEVSSNLSD ASEGHVVKEA QGPKEKRPFR GVRRRPWGKF  60
AAEIRDSTRN GVRVWIGTFD TAEAAALAYD QAAFSTRGSM AVLNFPEEVV RESLKDMPNK  120
PWEDGSSPVL ALKKKHTMRR KSKATNKKPK RDHHHGNVLS QNVLVLEDLG SDYLEQLLSL  180
TSSSSSSDHV FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2749109666ATERF1
3gcc_A4e-2749109666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522685.11e-100PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC87e-57ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9TXA81e-139A0A0L9TXA8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SR861e-139A0A0S3SR86_PHAAN; Uncharacterized protein
STRINGGLYMA10G04210.13e-80(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-46ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]